A multinational group of investigators has discovered that people suffering from schizophrenia are far more likely to carry rare chromosomal structural changes of all types, particularly those that have the potential to alter gene function.
In addition, the study uncovered two new specific genomic areas that, when altered, significantly increase the risk of developing the disease.
The report from the International Schizophrenia Consortium, the largest and most complete such study to date, is published in the online version of the journal Nature.
Schizophrenia is a common, chronic and often devastating brain disorder characterized by delusions and hallucinations. It affects around one person in 100 at some point in their lives and usually strikes in late adolescence or early adulthood.
Despite the availability of effective treatments, the course of the illness is usually chronic, and response often limited, leading to prolonged disability and personal suffering. Family history, which signifies genetic inheritance, is the strongest risk factor for schizophrenia, but until now little has been known about the specific genes or chromosome regions involved.
“This surprising excess of many types of chromosomal changes in schizophrenia patients provides us with rich clues to follow up in future research,” said Pamela Sklar, of the Department of Psychiatry and Center for Human Genetic Research at Massachusetts General Hospital (MGH), a senior associate member of the Broad Institute of MIT and Harvard and corresponding author of the Nature paper. “This work opens up an entirely new way to think about schizophrenia and eventually will suggest new avenues for researching effective therapies for the sake of patients and families suffering from this terrible disorder.”
Formed in 2006, the International Schizophrenia Consortium is led by senior researchers from 11 institutes in Europe and the U.S. The research team was coordinated by Sklar, who is also director of genetics at the Stanley Center for Psychiatric Research at the Broad Institute, which provided the major funding and research resources for the current work.
Professors Michele T. Pato, the Della Martin Chair in Psychiatry, and Carlos N. Pato, the Franz Alexander Professor, of the Center for Genomic Psychiatry and the Zilkha Neurogenetic Institute, led the USC team of investigators. Crucial to the success of the project was the willingness of consortium groups to pool DNA resources that have taken them years to collect, totaling 3,391 individuals with schizophrenia and 3,181 related individuals without the disorder.
The investigators used new genomic technologies and novel analytical techniques developed at the Broad Institute and at MGH to screen these samples for structural variants in the genome, sites where a portion of a chromosome is missing or duplicated. This unprecedented scale of cooperation allowed the analysis of enough data to identify schizophrenia-specific genome alterations�including the newly identified sites on chromosomes 1 and 15 and an area on chromosome 22 observed in earlier studies�as well as a subtle general increase in structural genomic variants in schizophrenia patients compared with controls. A second study also published in Nature confirms the association of those three genomic sites with increased risk for developing the disease.
“The consortium should be recognized for taking the important first step towards unearthing the full underlying genomic architecture of schizophrenia and other psychotic disorders,” said Edward Scolnick, director of the Stanley Center for Psychiatric Research at the Broad Institute. “Only by doing such a large study could we have uncovered these stunning findings to such a high degree of confidence, thus setting the stage for an even more complete understanding of the full genomic contributions to disease. This study could only have been done with the open collaboration of many individuals and institutions dedicated to understanding �and treating�this terrifying disease.”
Thomas Insel, director of the National Institute for Mental Health, which partially funded the study, added, “By implicating two previously unknown sites, this study triples the number of genomic areas definitely linked to schizophrenia. It also confirms in a large sample that unraveling the secrets of rare structural genetic variation may hold promise for improved diagnosis, treatment and prevention of such neurodevelopmental disorders.”
Michele T. Pato, of the Keck School of Medicine, comments that “the detection of two new specific genomic areas that, when altered, significantly increase risk, sheds new light and hope on our understanding of the genetics of schizophrenia.”
The Center for Genomic Psychiatry and the Zilkha Neurogenetic Institute led two major projects related to this study: the Genomic Psychiatry Cohort study, and the Portuguese Island Collection. The Portuguese Island Collection has been done in collaboration with the University of Coimbra and the psychiatry services of the Azores and Madeira in Portugal.
“Our studies that have focused on the Portuguese Islands have been extremely fruitful in identifying genetic risk factors such as these rare deletions,” explains Carlos N. Pato, also chair of the Department of Psychiatry at the Keck School of Medicine. “Combining the Portuguese Island populations with others from the International Schizophrenia Consortium proved the significance of these rare chromosomal deletions.”
The other authors participating through USC include Helena Medeiros, Frank Middleton, Celia Carvalho, Christopher Morley, Ayman Fanous, David Conti, James A. Knowles, Carlos Paz Ferreira, Antonio Macedo and M. Helena Azevedo.
The study was supported by grants from the Stanley Medical Research Foundation through the Stanley Center for Psychiatric Research, the National Institute of Mental Health and the Sylvan Herman Foundation. Other major funding bodies include NARSAD, FCT in Portugal, Wellcome Trust, the Science Foundation Ireland and the UK Medical Research Council.